Оптическая спектроскопия в исследовании молекулярных механизмов действия и создании новых противоопухолевых препаратов-ингибиторов ДНК топоизомеразы 1 человека
Диссертация
Экспериментально-методической основой настоящей работы явилось развитие комплексного подхода с использованием спектроскопии флуоресценции и поглощения, кругового и линейного дихроизма, а также спектроскопии КР, резонансного КР и ГКР. Совокупность данных, полученных этими методами, позволяет охарактеризовать структурные предпосылки молекулярных механизмов образования комплексов противоопухолевых… Читать ещё >
Содержание
- Список сокращений
- Глава 1. Современное состояние проблемы
- 1. 1. ДНК топоизомераза I человека
- 1. 2. Ингибиторы ДНК топоизомеразы I человека
- 1. 2. 1. Соединения-«яды» ДНК топоизомеразы I человека
- 1. 2. 2. Соединения-супрессоры ДНК топоизомеразы I человека
- 1. 2. 3. Гибридные ДНК-расщепляющие соединения
- 1. 3. Методы оптической спектроскопии в исследовании действия и ингибирования ДНК топоизомеразы I
- 1. 4. Спектроскопия гигантского комбинационного рассеяния света
- 1. 4. 1. Электромагнитный механизм усиления
- 1. 4. 2. «Химические» или «молекулярные» механизмы усиления
- 1. 4. 3. Экспериментальные методы получения спектров гигантского комбинационного рассеяния биологических объектов
- 1. 5. Выводы из анализа литературных данных и постановка задач исследования
- Глава 2. Новые технологии приготовления поверхностей с регулируемыми неоднородностями. Разработка новых типов ГКР-активных поверхностей
- 2. 1. Электромагнитные механизмы усиления КР на поверхностных неоднородностях
- 2. 2. ГКР-активные поверхности на основе острийных структур
- 2. 3. Резонансы локализованных плазмонов в системе полых металлических цилиндров
- 2. 4. Спектры ГКР биологических молекул: чувствительность и информативность метода
Список литературы
- Акципетров О.А., Баранова И. М., Мишина Е. Д., Петухов А. В., «Эффект громоотвода» при генерации гигантской второй гармоники, Письма в ЖЭТФ, 40, № 6, 240−242, (1984).
- Акципетров О.А., Баранова И. М., Ильинский Ю. А., Вклад поверхности в генерацию отраженной второй гармоники для центросимметричных полупроводников., ЖЭТФ, 91, в. 1(7), 287−297,(1986).
- Акципетров О.А., Кулюк JI.JI., Петухов А. В., Струмбан Э. Е., Цыцану В. И., Нелинейно-оптический метод исследования и контроля микронеоднородности поверхности металлов и полупроводников., Письма в ЖТФ, 12, в. 22, 1345−1349, (1986).
- Бугреев Д.В., Бунева В. Н., Синицина О. И., Невинский Г. А., Механизм узнавания суперскрученной ДНК эукариотическими топоизомеразами первого типа. I Взаимодействие ферментов с неспецифическими олигонуклеотидами. Биоорганич. химия, 29, № 2, 163−174, (2003).
- Виленский А.И., Олейников В. А., Мчедлишвили Б. В., Васильев А. Б., Апель П. Ю., Структурные изменения в полиэтилентерефталате при производстве ядерных мембран, Химия высоких энергий, 26, 59−62, (1992).
- Виленский А.И., Олейников В. А., Мчедлишвили Б. В., Исследование структуры треков ионов Хе в полиэтилентерефталате, Химия высоких энергий, 26,12−16, (1992).
- Виленский А.И., Олейников В. А., Купцова И. В., Марков Н. Г., Мчедлишвили Б. В., Гусинский Г. М., Треки высокоэнергетичных ионов в полиимиде: I. Свойства полиимида, облученного высокоэнергетичными ионами, Химия высоких энергий, 28, 285−289, (1994).
- Гигантское комбинационное рассеяние / Ред. Р. Ченг и Т. Фуртак. Пер. с англ., М., Мир., 408 С, (1984).
- Грибов JI.A., Дементьев В. А., Моделирование колебательных спектров сложных соединений на ЭВМ, Москва, «Наука», (1989).
- Грибов J1.A., Баранов В. И., Зеленцов Д. Ю., Электронно-колебательные спектры многоатомных молекул. Теория и методы расчета, Москва, «Наука», (1997).
- Грибов JI.A., Муштакова С. П. Квантовая химия, М. Гардарики, 390 с, (1999).
- Емельянов В.И., Коротеев Н. И., Эффект гигантского комбинационного рассеяния света молекулами, адсорбированными на поверхности металла, Успехи физ. наук, 135, 345−361,(1981).
- Ермушев А.В., Мчедлишвили Б. В., Олейников В. А., Петухов А. В., Поверхностное усиление локальных световых полей и эффект «громоотвода»., Квантовая электроника, 20, N.5, 503−509,.(1993).
- Кантор Ч., Шиммел П., Биофизическая химия, том 2, Пер. с англ., Москва, «Мир», (1984).
- Куделина И.А., Кузнецов В. И., Мчедлишвили Б. В., Набиев И. Р., Олейников В. А., Соколов К. В., Шестаков В. Д., Способ распознавания структуры и ингредиентов вещества. Авт.св. No. l673929, (1991).
- Маринюк В.В., Лазоренко-Маневич Р.П., О сечении комбинационного рассеяния адсорбированного на серебре пиридина., Электрохимия, 14, 1019−1023, (1978).
- Макаров В.Л., Стрельцов С. А., Венгеров Ю. Ю., Хорлин А. А., Гурский Г. В., Пространственная структура комплекса ДНК с олигопепимидом дансилгидразином тривалина, Молекулярная биол., 17,1089−1101, (1983).
- Марков Н.Г., Виленский А. И., Олейников В. А., Мчедлишвили Б. В., Донцова Э. П., Способ изготовления трековых мембран из полиимида. Патент РФ № 2 036 204, (1992).
- Мчедлишвили Б.В., Березкин В. В., Васильев А. Б., Олейников В. А., Ядерные фильтры и структуры на их основе.- В кн.:"Физическая кристаллография", М., Наука, 43−58, 366 С, (1992).
- Набиев И.Р., Ефремов Р. Г., Чуманов Г. Д., Гигантское комбинационное рассеяние и его применение к изучению биологических молекул., Успехи физ. наук., 154, в. 3, 459−494,(1988).
- Невинский Г. А., Важная роль слабых взаимодействий при узнавании ферментами протяженных молекул ДНК и РНК, Мол. биология, 29, в. 1, 16−37, (1995).
- Никулин А.А., Петухов А. В., Гигантская вторая гармоника на шероховатой поверхности металла: флуктуационный механизм диффузности и деполяризации излучения., Докл. АН СССР, 304, № 1, 87−91, (1989).
- Олейников В.А., Соколов К. В., Набиев И. Р., Микроанализ веществ методом спектроскопии ГКР с использованием технологии трековых мембран, Журн. прикл. спектроскопии, 59, №.5−6,458−464, (1993).
- Олейников В.А., Устинова О. А., Мочалов К. Е., Ермишов М. А., Гроховский C.JL, Жузе A.JI., Суханова А. В., Набиев И. Р. Кинетика лактон/карбоксилатного перехода гибридной молекулы камптотецин-нетропсин, Биофизика, 48,436−442, (2003).
- Флеров Г. Н., Синтез сверхтяжелых элементов и применение методов ядерной физики в смежных областях, Вестн. АН СССР, 4, 35−49, (1984).
- Якубовская Е.А., Куделина И. А., Бронштейн И. Б., Габибов А. Г., Новый подход к исследованию кинетики топоизомеразы, Докл. Акад. Наук., 361, 837−838, (1998).
- Якубовская Е.А., Габибов А. Г., Топоизомеразы. Механизмы изменения топологии ДНК, Мол. биология, 33, № 3, 368−384, (1999).
- Abelson, Н.Т., Penman, S., Selective interruption of high molecular weight RNA synthesis in HeLa cells by camptothecin, Nature New Biol., 237,144−146, (1972).
- Albrecht M.G., Creighton J.A., Anomaly intense Raman spectra of pyridine on silver electrode., J. Amer. Chem. Soc., 99, 5215−5217, (1977).
- Andoh, Т., Ishii, K., Suzuki, Y., Ikegami, Y., Kusunoki, Y., Takemoto, Y., Okada, K., Characterization of a mammalian mutant with a camptothecin-resistant DNA topoisomerase I, Proc. Natl. Acad. Sci. USA, 84, 5565−5569, (1987).
- Armand, J.P., Ducreux, M., Mahjoubi, M., Abigerges, D., Bugat, R., Chabot, G., Herait, P., de Forni, M., Rougier, P., СРТ-11 (irinotecan) in the treatment of colorectal cancer, Eur. J. Cancer., 31A, 1283−1287, (1995).
- Arvind P.K., Hood E., Metiu H., Angular resonances in the emission from a dipole located near a grating, Surf. Sci., 148, 411−418, (1984).
- Aussenegg F.R., Lippitch M.E., SERS of pyridine adsorbed on the silver surface, Chem. Phys. Lett., 59,214−216, (1978).
- Bailly, C., Riou, J.F., Colson, P., Houssier, C., Rodrigues-Pereira, E., Prudhomme, M., DNA cleavage by topoisomerase I in the presence of indolocarbazole derivatives of rebeccamycin, Biochemistry, 36, 3917−3929, (1997).
- Bailly, С., Chaires, J.B., Sequence-specific DNA minor groove binders. Design and synthesis of netropsin and distamycin analogues, Bioconjug. Chem., 9, 513−538, (1998).
- Barber, P.W., Chang, R.K., Massoudi, HM Electrodynamic calculations of the surface-enhanced electric intensities on large Ag spheroids, Phys. Rev. В., 27, 7251−7261, (1983).
- Beamer, L.J., Pabo, C.O., Refined 1.8 A crystal structure of the lambda repressor-operator complex, J. Mol. Biol., 227,177−196, (1992).
- Benevides, J.M., Li, Т., Lu, X.J., Srinivasan, A.R., Olson, W.K., Weiss, M.A., Thomas, G.J., Jr., Protein-directed DNA structure II. Raman spectroscopy of a leucine zipper bZIP complex, Biochemistry, 39, 548−556, (2000).
- Bergqvist, S., O’Brien, R., Ladbury, J.E., Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeon, Biochemistry, 40, 2419−2425 (2001).
- Bonven, B.J., Westergaard, O., DNase I hypersensitive regions correlate with a site-specific endogenous nuclease activity on the r-chromatin of Tetrahymena, Nucleic Acids Res., 10, 7593−7608,(1982).
- Bonven, B.J., Gocke E., Westergaard, O., A high affinity topoisomerase I binding sequence is clustered at DNAase I hypersensitive sites in Tetrahymena R-chromatin, Cell, 41, 541−551, (1985).
- Boyd, G.T., Rasing, Th., Leite, J.R.R., Shen, Y.R., Local-field enhancement on rough surfaces of metal, semimetals, amd semiconductors with the use of optical second-harmonic generation., Phys. Rev., B, 30, 519−526, (1984).
- Brodsky A.M., Uibakh M.J., Dependence of light reflection from metals on adatom characteristics. Phys. State Solid, 83, 633−644, (1977).
- Burke, T.G., Mi, Z., The structural basis of camptothecin interactions with human serum albumin: impact on drug stability., J. Med. Chem., 37,40−46, (1994).
- Burstein E., Chen Y.J., Chen C.Y., Giant Raman scattering by adsorbed molecules on metal surfaces, Solid State Commun., 29, 565−570, (1979).
- Champoux, J. J., DNA is linked to the rat liver DNA nicking-closing enayme by a phosphodiester bond to tyrosine, J, Biol, Chem., 256, 4805−4809, (1981).
- Champoux, J.J., DNA topoisomerases: structure, function, and mechanism, Annu. Rev. Biochem., 70,369−413, (2001).
- Chen, A.Y., Yu, С., Gatto, В., Liu, L.F., DNA minor groove-binding ligands: a different class of mammalian DNA topoisomerase I inhibitors, Proc. Natl. Acad. Sci. USA, 90, 8131−8135, (1993).
- Chen C.Y., Burstein E., Surface electromagnetic — wave — enhanced Raman scattering from overlayers on metals, Phys. Rev. Lett., 45, 1287−1291, (1980).
- Chen, C.K., de Castro, A.R.B., Shen, Y.R., Surface enhanced second harmonic generation., Phys. Rev. Lett., 46,145−148, (1981).
- Chen, W.P., Rithie, G., Burstein, E., Exitation of surface electromagnetic waves in attenuated total reflaction prism configurations, Phys. Rev. Lett., 37, 993−997, (1976).
- Chillemi, G., Castrignano, Т., Desideri, A., Structure and Hydration of the DNA-Human Topoisomerase I Covalent Complex, Biophys. Journ., 81, 490−500, (2001).
- Chillemi, G., Fioranil, P., Benedetti, P., and Desideri, A., Protein concerted motions in the DNA-human topoisomerase I complex, Nucleic Acids Res., 31,1525−1535, (2003).
- Chourpa, I., Millot, J.-M., Sockalingum, G.D., Riou, J.F., Manfait, M., Kinetics of lactone hydrolysis in antitumor drugs of camptothecin series as studied by fluorescence spectroscopy, Biochim Biophys Acta, 1379, 353−366, (1998).
- Chourpa, I., Riou, J-F., Millot, J-M., Pommier, Y., Manfait, M., Modulation in kinetics of lactone ring hydrolysis of camptothecins upon interaction with topoisomerase I cleavage sites on DNA, Biochemistry, 37, 7284−7291, (1998).
- Chumanov G.D., Efremov R.G., Nabiev I.R., Surface-enhanced Raman spectroscopy of biomolecules. Part I. Water-soluble proteins, dipeptides and amino acids., J. Raman Spectrosc., 21,43−48, (1990).
- Covey, J.M., Jaxel, C., Kohn, K.W., Pommier, Y., Protein-linked DNA strand breaks induced in mammalian cells by camptothecin, an inhibitor of topoisomerase I, Cancer Res., 49, 50 165 022, (1989).
- Dallavalle, S., Delsoldato, Т., Ferrari, A., Merlini, L., Penco, S., Carenini, N. Perego, P., De Cesare, M., Pratesi, G., Zunino, F., Novel 7-substituted camptothecins with potent antitumor activity, J. Med. Chem., 43, 3963−3969, (2000).
- Dancey, J., Eisenhauer, EA., Current perspectives on camptothecins in cancer treatment, Br. J. Cancer., 74, 327−338, (1996).
- Das, S., Gersten, J.I., Surface shape resonances, Phys. Rev. В., 25, 6281−6290, (1982).
- Das, S., Gersten, J.I., Electronic Raman scattering from spherical particles, Phys. Rev. B. Condens. Matter., 37, 6063−6072, (1988).
- Deng, H., Bloomfield, V.A., Benevides, J.M., Thomas, G.J., Jr., Dependence of the Raman signature of genomic B-DNA on nucleotide base sequence, Biochemistry, 50, 656−666, (1999).
- Dewar, M.J.S., Zoebisch, E.G., Healy, E.F., Stewart, J.P., AMI: a new general purpose quantum mechanical molecular model., J. Am. Chem. Soc., 107, 3902−3909, (1985).
- Dickerson, RE., DNA bending: the prevalence of kinkiness and the virtues of normality, Nucleic Acids Res., 26,1906−1926, (1998).
- Dornhaus R., Benner R.E., Chang R.K., Chabay I., Surface plasmon contribution in SERS, Surf. Sci., 101, 367−373, (1980).
- Durig, J.R., Far-infrared absorption, vibrational spectra and structure of beta-propiolactone, Spectrochem. Acta, 19,1225−1233, (1963).
- Efrima S., Metiu H., Classical theory of light scattering by a molecule located near a solid surface, Chem. Phys. Lett., 60, 59−64, (1979).
- Efrima S. The effect of large electric field gradients on the Raman optical activity of molecules, adsorbed on metal surfaces, Chem Phys. Lett., 102, 79−82, (1983).
- Efrima S., Yogev D., Raman scattering from silver metal «liquid-like» films, In: Eleventh international conference on Raman spectroscopy, eds. R.J.H. Clark and D.A. Long, John Wiley, New York, 179−180 (1988).
- Fang, S.D., Wang, L.K., Hecht, S.M., Inhibitors of DNA topoisomerase I isolated from the roots of Zanthoxylum Nitidum, J. Org. Chem., 58, 5025−5027, (1993).
- Fassberg, J., Stella, V.J., A kinetic and mechanistic study of the hydrolysis of camptothecin and some analogues. J. Pharmaceutical Sciences, 81, 676−684, (1992).
- Fischer, B.E., Spohr, R., Production and use of nuclear tracks: imprinting structure on solids, Rev. Mod. Physics, 55,907−948, (1983).
- Fleishmann, M., Hendra, P.J., McQuillan, A. J., Raman spectra from electrode surfaces., J. Chem. Soc. Chem., Commun., p. 80, (1973).
- Fleishman M., Hendra, P.J., McQuillian A.J., Raman spectra of pyridine adsorbed at silver electrode, Chem. Phys. Lett., 26, 163−166, (1974).
- Fleishman M., Hendra, P.J., McQuillian A.J., Paul R.L., Reid E.S., Raman spectroscopy at electrode electrolyte interfaces, J. Raman Spectrosc., 4,269−274, (1976).
- Fleishman M., Hendra, P.J., Hill I.R., Pemble M.E., Enhanced Raman spectra from species formed by the coadsorption on halide ions and water molecules on silver electrode, J. Electroanalyt. Chem., 117, 243−255, (1980).
- Fujii, N., Yamashita, Y., Mizukami, Т., Nakano, H., Correlation between the formation of cleavable complex with topoisomerase I and growth-inhibitory activity for saintopin-type antibiotics, Mol. Pharmacol., 51, 269−276, (1997).
- Fujimori, A., Harker, W.G., Kohlhagen, G., Hoki, Y., Pommier, Y., Mutation at the catalytic site of topoisomerase I in CEM/C2, a human leukemia cell line resistant to camptothecin, Cancer Res., 55, 1339−1346,(1995).
- Gatto, В., Sanders, M.M., Yu, С., Wu, H.Y., Makhey, D., LaVoie, E.J., Liu, L.F., Identification of topoisomerase I as the cytotoxic target of the protoberberine alkaloid coralyne, Cancer Res., 56,2795−2800, (1996).
- Gersten J.I., Birke R.L., Lombardi J.R., Theory of enhanced light scattering from molecules adsorbed on the metal solution interfaces, Phys. Rev. Lett., 43, 147−150, (1979).
- Gersten, J.I., Nitzan, A., Electromagnetic theory of enhanced Raman scattering by molecules absorbed on rough surfaces., J. Chem. Phys., 73,3023−3037 (1980).
- Gil, M., Nunes, J.L., Palafox, M. A., Iza, N., FTIR study of five complex beta-lactam molecules., Biopolymers, 62,278−294, (2001).
- Gilmour, D.S., Elgin, S.C., Localization of specific topoisomerase I interactions within the transcribed region of active heat shock genes by using the inhibitor camptothecin, Mol. Cell Biol., 7, 141−148, (1987).
- Gololobov, G., Chemova, E., Schourov, D., Smirnov, I., Kudelina, I., Gabibov, A., Cleavage of Supercoiled Plasmid DNA by Autoantibody Fab Fragment: Application of the flow linear dichroism technique, Proc. Natl. Acad. Sci. USA, 92, 254−257, (1995).
- Goodsell, D., Корка, M.L., Dickerson, R.E., Deoxyribonucleic acid. Brookhaven Protein Data Bank. Identification code: NT-lOld, (1994)
- Gribov, L.A., Reichstat, M.M., Force density method for chemical bond characterization, J. Mol. Structure, 183,121−133, (1989).
- Griffin, J.H., Dervan, P.B., Sequence-specific chiral recognition of right-handed double-helical DNA by (2S, 3S) — and (2R, 3R)-dihydroxybis (netropsin)succinamide., J. Am. Chem. Soc., 108, 5008−5009, (1986).
- Grokhovsky, S.L., Zubarev, V.E., Sequence-specific cleavage of double-stranded DNA caused by X-ray ionization of the platinum atom in the Pt-bis-netropsin DNA complex, Nucl. Acids Res., 19, 257−264, (1991).
- Grokhovsky, S.L., Surovaya, A.N., Burckhardt, G., Pismensky, V.F., Chernov, B.K., Zimmer, C., Gursky, G.V., DNA sequence recognition by bis-linked netropsin and distamycin derivatives. FEBS Lett., 439, 346−350, (1998).
- Gromova, I., Kjeldsen, E., Sveistrup, J., Alsner, J., Christiansen, K., Westergaard, O., Characterization of an altered DNA catalysis of a camptothecin-resistant eukaryotic topoisomerase I., Nucleic Acids Res., 21, 593−600, (1993).
- Grygon, C.A., Spiro, T.G., Ultraviolet resonance Raman spectroscopy of distamycin complexes with poly (dA)-poly (dT) and poly (dA-dT): role of H-bonding, Biochemistry, 28, 4397−4402, (1989).
- Gupta, M., Fujimori, A., Pommier, Y., Eukaryotic DNA topoisomerases I, Biochem. Biophys. Acta., 1262, 1−14, (1995).
- Hofricher, J., Eaton, W.A., Linear dichroism of biological chromophores, Annu. Rev. Biophys. Bioeng., 5, 511−560, (1976).
- Jackson, J. В., Westcott, S. L., Hirsch, L. R., West, J. L., Halas, N. J., Controlling the surface enhanced Raman effect via the nanoshell geometry., Applied Phys. Lett., 82, 257−259, (2003).
- Jaenmaire D.J., Van Duyne R.P., Surface Raman spectroelectrochemistry. Part I, Heterocyclic, aromatic and aliphatic amines adsorbed on anodized silver electrodes., J. Electroanalyt. Chem., 84, 1−20, (1977)
- Jaxel, C., Capranico, G., Kerrigan D., Kohn, K.W., Pommier Y., Effect of local DNA sequence on topoisomerase I cleavage in the presence or absence of camptothecin, J. Biological Chem., 266, 20 418−20 423, (1991).
- Jha S.S., Kirtley J.R., Tsang J.C., Intensity of Raman scattering from molecules adsorbed on metal gratings, Phys. Rev. Ser. B, 22, 5187−5191, (1980).
- Katahira, M., Sugeta, H., Kyogoku, Y., A new model for the bending of DNAs containing the oligo (dA) tracts based on NMR observations, Nucleic Acids Res., 18, 613−618, (1990).
- Kaufmann S., DNA topoisomerases in chemotherapy, Cancer Cells, 3, 24−27, (1991).
- Kehrer, D.F., Soepenberg, O., Loos, W.J., Verweij, J., Sparreboom, A., Modulation of camptothecin analogs in the treatment of cancer: a Review, Anticancer Drugs. 12, 89−105, (2001).
- Kerrigan, J.E., Pilch, D.S., A structural model for the ternary cleavable complex formed between human topoisomerase I, DNA and camptothecin, Biochemistry, 40, 9792−9798, (2001).
- Khorlin, A.A., Krylov, A.S., Grokhovsky, S.L., Zhuze, A.L., Zasedatelev, A.S., Gursky, G.V., Gottikh, B.P., A new type of AT-specific ligand constructed of two netropsin-like molecules, FEBS Lett., 118, 311−314, (1980).
- Kim, J.L., Burley, S.K., 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG, Nat. Struct. Biol., 1, 638−653, (1994).
- Kim, J.S., Sun, Q., Gatto, В., Yu, C., Liu, A., Liu, L.F., LaVoie, E.J., Structure-activity relationships of benzimidazoles and related heterocycles as topoisomerase I poisons. Bioorg. Med. Chem., 4,621−630, (1996).
- Kirtley J.R., Jha S.S., Tsang J.C., To the theory of SERS effect on the meal/air interfaces, Solid State Commun., 35, 509−512, (1980).
- Kissinger, C.R., Liu, B.S., Martin-Blanco, E., Kornberg, T.B., Pabo, C.O., Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions, Cell, 63, 579−590, (1990).
- Kjeldsen, E., Bonven, B.J., Andoh, Т., Ishii, K., Okada, K., Bolund, L., Westergaard, O., Characterization of a camptothecin-resistant human DNA topoisomerase I, J. Biol. Chem., 263, 3912−3916,(1988).
- Kjeldsen, E., Svejstrup, J.O., Gromova, I.I., Alsner J., Westergard, O., Camptothecin inhibits both the cleavage and religation reactions of eukaryotic DNA topoisomerase I, J. Mol. Biol., 228, 1025−1030,(1992).
- Корка, M.L., Yoon, С., Goodsell, D., Pjura, P., Dickerson, R.E., The molecular origin of DNA-drug specificity in netropsin and distamycin., Proc. Natl. Acad. Sci. USA, 82, 1376−1380, (1985).
- Корка, M.L., Yoon, C., Goodsell, D., Pjura, P., Dickerson, R.E., Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G., J. Mol. Biol., 83, No. 4, 553−563, (1985).
- Krogh, S., Mortensen, U.H., Westergaard, O., Bonven, B.J., Eukaryotic topoisomerase I-DNA interaction is stabilized by helix curvature, Nucleic Acids Res., 19, 1235−1241, (1991).
- Kwon, K, Stivers, J.T., Fluorescence spectroscopy studies of vaccinia type IB DNA topoisomerase. Closing of the enzyme clamp is faster than DNA cleavage, J. Biol. Chem., 277,345−352, (2002).
- Madden, K.R., Champoux, J.J., Overexpression of human topoisomerase I in baby hamster kidney cells: hypersensitivity of clonal isolates to camptothecin, Cancer. Res., 52, 525−532, (1992).
- Madden, K., Stewart, L., Champoux, J.J., Preferential binding of human topoisomerase I to superhelical DNA, EMBO Journ., 14, 5399−5409, (1995).
- Martin, J.C., Wartell, R.M., O’Shea, D.C., Conformational features of distamycin-DNA and netropsin-DNA complexes by Raman spectroscopy, Proc. Natl. Acad. Sci. USA, 75, 54 835 487, (1978).
- Mathijssen, R.H.J., Loos, W. J, Verweij, J., Sparreboom A., Pharmacology of topoisomerase I inhibitors Irinotecan (CPT-11) and topotecan. Current Cancer Drug Targets, 2, 103−123, (2002).
- McCall S.L., Platzman P.M., Wolff P.A., Raman scattering from chemisorbed molecules at surfaces, Phys. Rev. Ser. A, 77, 381−383, (1980).
- Mchedlishvili B.V., Beryozkin V.V., Oleinikov V.A., Vilensky A.I., Vasilyev A.B., Structure, physical and chemical properties and applications of nuclear filters as new class of membranes, Journ. Membrane Science, 79, 285−304, (1993).
- McPhail, A.T., Sim, G.A., The structure of camptothecin: X-ray analysis of camptothecin iodoacetate, J. Chemical Society B, No. 8, 923−928, (1968)
- Mlinsky V.V., Makarov A.A., Oleinikov V.A., The application of nuclear track membranes for ion sampling to mass-spectrometer, Radiation Measurements, 25, 741−742, (1995).
- Nabiev, I., Sokolov, K., Manfait, M., Surface-Enhanced Raman Spectroscopy and its Biomedical Applications. In the book: «Biomolecular Spectroscopy», Part A, ed. by R. J. H. Clark and R. E. Hester, John Wiley & Sons, Ltd., Chichester, 267−338, (1993).
- Nechipurenko, Yu.D., Mikheikin, A.L., Streltsovl, S.A., Zasedatelev, A.S., Nabiev, I.R., Mixed mode of ligand-DNA binding results in S-shaped binding curves. J. Biomolecular Structure & Dynamics, 18, 703−708, (2001).
- Ni F., Cotton T.M., Chemical procedure for preparing surface enhanced Raman scattering active silver films, Anal. Chem., 58, 3159−3163, (1986).
- Nie, S., Emory, S.R., Probing Single Molecules and Single Nanoparticles by Surface-Enhanced Raman Scattering, Science, 275, 1102−1106,(1997).
- Norden, В., Kubista, M., Kurucsev, Т., Linear dichroism spectroscopy of nucleic acids, Quart. Rev. Biophys., 25,51−170, (1992).
- Nyquist, R.A., Fouchea, H.A., Hoffman, G.A., Hasha, D.L., Infrared study of P-propiolactone in various solvent systems and other lactones, Appl. Spectroscopy, 45, 860−867, (1991).
- Oldenburg, S.J., Westcott, S.L., Averitt, R.D., Halas, N.J., Surface enhanced Raman scattering in the near infrared using metal nanoshell substrates, J. Chem. Phys., Ill, 4729−4735, (1999).
- Spectroscory of Biological Molecules, edited by T. Theophanides, Kluwer Academic Publishers, Dordrecht, 393−394, (1994).
- Oleinikov V.A., Tolmachyova Yu.V., Berezkin V.V., Vilensky A.I., Mchedlishvili B.V., Polyethileneterephthalate track membranes with conical pores: etching by water-alcohol alkali solutionns, Radiation Measurements, 25, 713−714, (1995).
- Oleinikov V.A., Makarov A.A., Application of secondary structures prepared on the base of track membrane technique for scanning tunneling microscopy, Radiation Measurements, 25, 699−702, (1995).
- Oleinikov, V., Feofanov, A., Ianoul, A., Kryukov, E., Shiyan, S., Bovin, N., Nabiev, I., The structure of carbohydrate chains of alpha 1-acid glycoprotein. Surface-enhanced Raman scattering spectroscopy study, European Biophys. Journ., 26, 30, (1997).
- Oleinikov, V., Kryukov, E., Kovner, M., Ermishov, M., Tuzikov, A., Shiyan, S., Bovin, N., Nabiev, I., Sialylation sensitive bands in the Raman spectra of oligosaccharides and glycoproteins, J. Molecular Structure, 480−481, 475−480, (1999).
- Oleinikov, V., Mochalov, K., Sukhanova, A., Ermishev, M., Grokhovskiy, S., Zhuze, A.L., Jardillier, J.C., Nabiev, I. Raman Spectroscopy of DNA-Topotecan Complexes. Proc. XVIIth Int. Conf. on Raman Spectroscopy, Beijing, China, 1012−1013, (2000).
- Oleinikov V. Mochalov, K., Ustinova, O., Zhuze, A., Streltsov, S., Sukhanova, A., Jardillier J.-C., Nabiev, I., Raman spectroscopy study of DNA binding by topotecan, inhibitor of DNA topoisomerase I, Anticancer Research, 21, 1552−1553, (2001).
- Oleinikov, V., Sukhanova, A., Mochalov, K., Ustinova, O., Kudelina, I., Bronstein, I., Nabiev, I., DNA binding induces conformational transition within the human DNA topoisomerase I in solution, Biopolymers: Biospectroscopy, 67, No. 6, 369−375, (2002).
- Pabo, C.O., Sauer, R.T., Transcription factors: structural families and principles of DNA recognition, Annu. Rev. Biochem., 61, 1053−1095, (1992).
- Patel, D.J., Shapiro, L., Sequence-dependent recognition of DNA duplexes. Netropsin complexation to the AATT site of the d (G-G-A-A-T-T-C-C) duplex in aqueous solution, J. Biol. Chem., 261,1230−1240, (1986).
- Perini, R., Caserta, M., Di Mauro, E., DNA tridimensional context affects the reactivity of eukaryotic DNA topoisomerase I, J. Mol. Biol., 231, 634−645, (1993)
- Pettinger В., Wenning U., Kolb D.M., Raman and reflectance spectroscopy of pyridine adsorbed on single crystalline silver electrodes, Ber. Bunges. Phys. Chem., 82, 37−41, (1980).
- Pommier, Y., Kohlhagen, G., Kohn, K.W., Leteurtre, F., Wani, M.C., Wall, M.E., Interaction of an alkylating camptothecin derivative with a DNA base at topoisomerase I-DNA cleavage sites, Proc. Natl. Acad. Sci. USA, 92, 8861−8865, (1995).
- Pommier, Y., Gupta, M., Valenti, M., Nieves-Niera, W., Cellular resistance to camptothecin, In: «The camptethecin: from discovery to the patient», The New-York Academy of Sciences, New-York, 60−73, (1996).
- Pommier, Y., Pourquier, P., Fan, Y., Strumberg, D., Mechanism of action of eukariotic DNA topoisomerase I and drugs targeted to the enzyme, Biochem. Biophys, Acta, 1400, 83−106, (1998).
- Porter, S.E., Champoux, J.J., Mapping in vivo topoisomerase I sites on sminian virus 40: assymetric distribution of sites on replicating molecules, Mol. Cell Biol., 9, 541−550, (1989).
- Porter, S.E., Champoux, J.J., The basis for camptothecin enhancement of DNA breakage by eukaryotic topoisomerase I, Nucleic Acids Res., 17, 8521−8532, (1989).
- Prescott, В., Steinmetz, W., Thomas, G.J., Jr., Characterization of DNA structures by laser Raman spectroscopy, Biopolymers, 23, 235−256, (1984).
- Redinbo, M.R., Stewart, L., Kuhn, P., Champoux, J J., Hoi, W.G.J., Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA, Science, 279, 1504−1513,(1998).
- Redinbo, M.R., Champoux, J.J., Hoi, W.G.J., Novel insights into catalytic mechanism from a crystal structure of human topoisomerase I in complex with DNA, Biochemistry, 39, 68 326 840, (2000).
- Rodger, A., Norden, В., Circular dichroism and linear dichroism. Ed. Oxford University Press, (1997)
- Slichenmyer, W.J., Rowinsky, E.K., Donehower, R.C., Kaufmann, S.H., The current status of camptothecin analogues as antitumor agents, J. Natl. Cancer Inst., 85,271−291, (1993).
- Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin, A.B. Jr., Stewart, L" The mechanism of topoisomerase I poisoning by a camptothecin analogue, Proc. Natl. Acad. Sci. USA, 24, 15 387−15 392, (2002).
- Stewart, L., Ireton, G.C., Champoux, J.J., The domain organization of human topoisomerase I, J. Biol. Chem., 271, 7602−7608, (1996).
- Stewart, L., Ireton, G.C., Champoux, J.J., Reconstitution of human topoisomerase I by fragment complementation, J. Mol. Biol., 269, 355−372, (1997).
- Stewart, L., Redinbo, M.R., Qiu, X., Hoi, W.G.J., Champoux, J.J., A Model for" the Mechanism of Human Topoisomerase I, Science, 279,1534−1541, (1998).
- Storl, K., Storl, J., Zimmer, C., Lown, J.W., Minor-groove binders are inhibitors of the catalytic activity of DNA gyrases, FEBS Lett., 317,157−162, (1993).
- Sukhanova, A., Grokhovsky, S., Zhuze, A., Roper, D., Bronstein, I. Human DNA-topoisomerase I activity is affected by bis-netropsin's binding to DNA minor groove, Biochem. Mol. Biol. Intl., 44, 997−1010,(1998).
- Tang J., Albrecht A.C., Plasmon polaritons in the single small metal particles, Raman Spectroscopy. Theory and Practice / Ed. Szymanski, New York, Plenum Press, 2, 33−61, (1980).
- Tanizawa, A., Kohn, K.W., Pommier, Y., Induction of cleavage in topoisomerase I c-DNA by topoisomerase I enzymes from calf thymus and wheat germ in the presence and absence of camptothecin, Nucleic Acids Res., 21,5157−5166, (1993).
- Thomas G.J., Jr., Tsuboi, M., Raman spectroscopy of nucleic acids and their complexes, Adv. Biophys. Chem., 3,1−70, (1993).
- Tsang J.C., Avouris Ph., Kirtley J.R., Surface enhanced Raman scattering and surface plasmons, J. Electron. Spectr., 29, 343−348, (1983).
- Ueba H., Effective resonance light scattering from adsorbates molecules, J. Chem. Phys., 73, 725−732, (1980).
- Ulukan, H., Swaan, P.W., Camptothecins: a review of their chemotherapeutic potential, Drugs, 62,2039−2057, (2002).
- Uphaus R.A., Cotton T.M., Mobius D., Surface enhanced resonance Raman spectroscopy of synthetic dyes and photosythetic pigments in monolayer and multilayer assemblies, Thin Solid Films, 132, 173−185, (1985).
- Vidugiris, G.J., Gudavicius, A.V., Razumas, V.J., Kulys, J.J., Structure-potential dependence of adsorbed enzymes and amino acids revealed by the surface enhanced Raman effect, Eur. Biophys. J., 17,19−23, (1989).
- Wall, M.E., Wani, M.C., Cooke, C.E., Palmer, K.H., Mcphail, A.T., Sim, G.A., The isolation and structure of camptothecin, a novel alkaloidal leukemia and tumor inhibitor from Camptotheca acuminate, J. Am. Chem. Soc., 88,3888−3890, (1966).
- Wang, C.C., Dervan, P.B., Sequence-specific trapping of topoisomerase I by DNA binding polyamide-camptothecin conjugates. J. Am Chem. Soc., 123, 8657−8661, (2001).
- Wang, J.C., DNA topoisomerases, Ann. Rev. Biochem., 54, 665−697, (1985).
- Wang, J.C., DNA topoisomerases, Ann. Rev. Biochem., 65, 635−692, (1996).
- Wang, J.C., Cellular roles of DNA topoisomerases: a molecular perspective, Nature, 3,430−440, (2002).
- Wang, L.K., Rogers, B.D., Hecht, S.M., Inhibition of topoisomerase I function by coralyne and 5,6-dihydrocoralyne, Chem. Res. Toxicol., 9,75−83, (1996).
- Wang, Z., Zimmer, C., Lown, J.W., Knippers, R., Effects of bifunctional netropsin-related minor groove-binding ligands on mammalian type I DNA topoisomerase, Biochem. Pharmacol., 53, 309−316, (1997).
- Wartell, R.M., Harrell, J.T., Characteristics and variations of B-type DNA conformations in solution: a quantitative analysis of Raman band intensities of eight DNAs, Biochemistry, 25, 2664−2671, (1986).
- Weber W.H., Ford G.W., Optical electric-field enhancement at a metal surface arising from surface-plasmon excitation, Opt. Lett., 6,122−124, (1981).
- Werner, M.H., Huth, J.R., Gronenborn, A.M., Clore, G.M., Molecular basis of human 46X, Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex, Cell, 81,705−714, (1995).
- Yamachita M., Tsuji M., Simple theory for surface-plasmon-polariton resonance on sinusoidal metal surface application to SERS, J. Phys. Soc., Japan, 52, 2462−2471, (1983).
- Yamashita Y, Kawada S, Fujii N, Nakano H., Induction of mammalian DNA topoisomerase I and II mediated DNA cleavage by saintopin, a new antitumor agent from fungus, Biochemistry, 30, 5838−5845, (1991).
- Yamashita, Y., Fujii, N., Murakata, C., Ashizawa, Т., Okabe, M., Nakano, H., Induction of mammalian DNA topoisomerase I mediated DNA cleavage by antitumor indolocarbazole derivatives, Biochemistry, 31, 12 069−12 075, (1992).
- Yang, D., Strode, J.T., Spielmann, H.P., Wang, A.H.-G., Burke, T.G., DNA interactions of two clinical camptothecin drugs stabilize their active lactone forms, Am. Chem. Soc., 120, 29 792 980, (1998).
- Yao, S., Murali, D., Seetharamulu, P., Haridas, K., Petluru, P.N.V., Reddy, D.G., Hausheer, F.H., Topotecan lactone selectively binds to double- and single-stranded DNA in the absence of topoisomerase I, Cancer Res., 58, 3782−3786, (1998).
- Zerner, M.C., Loew, G.H., Kirchner, R.F., Mueller-WesterhofF, U.T., An intermediate neglect of differential overlap technique for spectroscopy of transition-metal complexes. Ferrocene, J.Am.Chem.Soc., 102, 589−599, (1980).
- Zhao, R., Al-Said, N.H., Sternbach, D.L., Lown, J.W., Camptothecin and minor-groove binder hybrid molecules: synthesis, inhibition of topoisomerase I, and anticancer cytotoxicity in vitro, J. Med. Chem., 40, 216−225, (1997).
- Zimmer C, Wahnert U., Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material., Prog. Biophys. Mol. Biol., 47,31−112, (1986).