Моделирование и предсказание укладок белковых цепей при помощи регулярных и нерегулярных пространственных решеток
Диссертация
Классические исследования Анфинсена (Anfinsen, 1961) продемонстрировали, что сворачивание белковой глобулы в подходящих условиях происходит самопроизвольно, и что уникальная пространственная структура белка, и, следовательно, его биологическая функция, однозначно определяются его аминокислотной последовательностью. Следствием этого фундаментального открытия является вывод о термодинамической… Читать ещё >
Содержание
- Глава 1. Обзор литературы
- 1. 1. Решеточные модели белков как инструмент их исследования
- 1. 2. Предсказание пространственной структуры белков: обзор современного состояния проблемы
- Глава 2. Поиск (построение) конформации цепи на кубической решетке, наилучшим образом приближающей пространственную структуру белка
- 2. 1. Моделирование хода главной цепи белка на решетке. Метод глобальной минимизации
- 2. 2. Решеточные модели белковых цепей с боковыми группами
- 2. 3. Построение решеточных моделей больших белков с применением теории самосогласованного поля
- 2. 4. Построение решеточных моделей, оптимизированных по энергии парных взаимодействий.-.,. «'
- Глава 3. Предсказание пространственной структуры белка по его аминокислотной последовательности
- 3. 1. Поиск структуры с наименьшей энергией в молекулярном поле. Метод «протягивания»: модель и теория
- 3. 2. Метод «протягивания»: результаты и обсуждение
- 3. 3. Возможность предсказания новых мотивов укладки цепи
- 3. 4. Использование гомологичных последовательностей и структурно похожих белков для улучшения качества предсказания
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