Разработка методов быстрой классификации белков по данным малоуглового рассеяния и анализ строения белковых комплексов в растворе
Диссертация
Проведен анализ процесса олигомеризации молекул одной из компонент цитоскелета — промежуточного филамента (ПФ) виментина. ПФ играют роль в важных процессах, таких как перемещение и сопротивление клеток внешнему механическому воздействию, и поэтому очень часто нарушения процессов олигомеризации виментина in vivo приводит к серьезному повреждению тканей целого организма. Наименьшей структурной… Читать ещё >
Содержание
- ГЛАВА 1. Обзор литературы
- 1. 1. Традиционные методы анализа кривых рентгеновского малоуглового рассеяния
- 1. 1. 1. Определение структурных инвариантов
- 1. 1. 2. Расчет структурных характеристик сильно вытянутых частиц
- 1. 2. Информационное содержание данных малоуглового рассеяния
- 1. 3. Методы восстановления формы частиц при отсутствии дополнительной информации
- 1. 4. Расчет кривых малоуглового рассеяния частицами с известной кристаллографической структурой
- 1. 5. Анализ структуры белков и комплексов. Метод молекулярной тектоники
- 1. 6. Кривые малоуглового рассеяния смесями: исследование формы и количества компонент
- 1. 7. Новые задачи рентгеновского малоуглового рассеяния
- 1. 1. Традиционные методы анализа кривых рентгеновского малоуглового рассеяния
- ГЛАВА 2. Получение, обработка и интерпретация данных рентгеновского малоуглового рассеяния
- 2. 1. Сбор данных синхротронного рассеяния: установка ХЗЗ кольца DORIS III (DESY)
- 2. 2. Первичная обработка данных
- 2. 3. Анализ и интерпретация данных. Программа PRIMUS
- Система ATSAS
- ГЛАВА 3. База данных для быстрой классификации белков по данным рентгеновского малоуглового рассеяния
- 3. 1. Атомные модели и критерии сравнения кривых
- 3. 2. Малоугловая часть малоугловых данных и аналоги по внешней форме
- 3. 3. Среднеугловая часть кривой и аналоги по доменной архитектуре
- 3. 4. Алгоритм и пользовательский интерфейс разработанной базы данных
- DaRa
- 3. 5. Примеры использования базы данных
- ГЛАВА 4. Определение структуры вертексного комплекса бактериофага PRD1 в растворе
- 4. 1. Бактериофаг PRD1 как структурный аналог аденовируса
- 4. 2. Экспериментальные данные
- 4. 3. Учет дополнительной информации
- 4. 4. Построение моделей
- ГЛАВА 5. Исследование процесса олигомеризации промежуточного филамента виментина в различных внешних условиях
- 5. 1. Промежуточные филаменты: компонента цитоскелета
- 5. 2. Экспериментальные данные и алгоритм их обработки
- 5. 3. Построение моделей олигомеров виментина
- 5. 4. Олигомеризация виментина в различных внешних условиях
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